HMDD (the Human microRNA Disease Database) is a resource that curates experimentally supported miRNA and disease association data. HMDD was originally constructed on December 2007 and was updated more than 30 times during the past ten years. On June 2013, we released HMDD version 2 (HMDD v2.0).

HMDD (the Human microRNA Disease Database) is a database that curated experiment-supported evidence for human microRNA (miRNA) and disease

For example, medium stringency(>=2) means that >=2 CLIP-Seq experiments supported the predicted miRNA target 2008-10-06 · CoGemiR is a publicly available microRNA-centered database whose aim is to offer an overview of the genomic organization of microRNAs and of its extent of conservation during evolution in different metazoan species. miRNAbodymap: The microRNA body map is a repository of RT-qPCR miRNA expression data and functional miRNA annotation in normal and diseased human tissues. (2009) High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera. BMC Genomics 10: 558 [NCBI] 119 > Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J. (2010) Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis. Search instruction - Step 1: Identify a miRNA of interest. Step 2: Select a cell line of interest for target prediction. For target expression analysis, the expression levels of predicted miRNA targets are retrieved from miRDB.

Microrna database

miRNAbodymap: The microRNA body map is a repository of RT-qPCR miRNA expression data and functional miRNA annotation in normal and diseased human tissues. (2009) High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera. BMC Genomics 10: 558 [NCBI] 119 > Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J. (2010) Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis. Search instruction - Step 1: Identify a miRNA of interest. Step 2: Select a cell line of interest for target prediction. For target expression analysis, the expression levels of predicted miRNA targets are retrieved from miRDB.

PmiREN (Plant miRNA ENcyclopedia) is a comprehensive functional plant miRNA database. In current version, PmiREN contains 20388 miRNA loci (MIRs) belonging to 5757 families, 1365 clusters, 1668 syntenic blocks and 141327 predicted miRNA-target pairs in 88 species phylogenetically ranging from chlorophytes to angiosperms. 2010-11-01 · To facilitate future updates and development, the microRNA.org database structure and software architecture is flexibly designed to incorporate new expression and target discoveries.

av G Canesin · 2017 · Citerat av 38 — Figshare database (https://doi.org/10.6084/m9.figshare.5258533.v1). cancer cell invasion epigenetically through regulating microRNA-194

PmiREN (Plant miRNA ENcyclopedia) is a comprehensive functional plant miRNA database. In current version, PmiREN contains 20388 miRNA loci (MIRs) belonging to 5757 families, 1365 clusters, 1668 syntenic blocks and 141327 predicted miRNA-target pairs in 88 species phylogenetically ranging from chlorophytes to angiosperms. The microRNA analysis portal is a next-generation tool for exploring and analyzing miRNA-focused data in the literature Stefano Pirrò 1 , Ivana Matic 1 , 2 , OncoMir Cancer Database is a repository that allows easy and systematic comparative genomic analyses of microRNA expression sequencing data derived from over 10,000 cancer patients with associated clinical information and organ-specific controls present in The Cancer Genome Atlas database. TransmiR is a database for transcription factor (TF)-microRNA (miRNA) regulations, through which one can find regulatory relations between TFs and miRNAs.

Welcome to PmiREN. PmiREN (Plant miRNA ENcyclopedia) is a comprehensive functional plant miRNA database. In current version, PmiREN contains 20388 miRNA loci (MIRs) belonging to 5757 families, 1365 clusters, 1668 syntenic blocks and 141327 predicted miRNA-target pairs in 88 species phylogenetically ranging from chlorophytes to angiosperms.

In current version, PmiREN contains 20388 miRNA loci (MIRs) belonging to 5757 families, 1365 clusters, 1668 syntenic blocks and 141327 predicted miRNA-target pairs in 88 species phylogenetically ranging from chlorophytes to angiosperms. Welcome to the plant microRNA database (PMRD) homepage! MicroRNAs play an essential role in regulating plant growth and development and recently research in microRNAs has made great progress. With whole genome sequence available in the plants such as Arabidopsis thaliana , Oryza sativa , Populus trichocarpa , Glycine max , etc., it is necessary OncoMir Cancer Database (OMCD) OncoMir Cancer Database is a repository that allows easy and systematic comparative genomic analyses of microRNA expression sequencing data derived from over 10,000 cancer patients with associated clinical information and organ-specific controls present in The Cancer Genome Atlas database.

SSEARCH is useful for finding a short sequence within the library of miRNAs (for instance, find a short motif in a miRNA or precursor stem-loop, or find mature sequences that are related to your query). E-value cutoff: An intragenic microRNA database. Genes: Search by most common gene identifiers, see examples: Official symbol: LARP7; TP53 | Entrez gene: 51574; 7157 | Ensembl HMDD (the Human microRNA Disease Database) is a resource that curates experimentally supported miRNA and disease association data. HMDD was originally constructed on December 2007 and was updated more than 30 times during the past ten years. On June 2013, we released HMDD version 2 (HMDD v2.0). Welcome to the plant microRNA database (PMRD) homepage!
Predilektion

[December 20, 2016] A new tool is implemented within WMP: MicroRNA Finder.

thaliana) and rice (O. sativa). Four major functional modules such as SNPs, Pri-miR, MiR–Tar, Self-reg are included.
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MirGeneDB is a database of microRNA genes that have been validated and annotated as described in "A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome".* The initial version contained 1,434 microRNA genes for human, mouse, chicken and zebrafish.

MicroRNAs, or miRNAs, are small RNAs that regulate gene expression after transcription has taken place. This occurs in Sep 18, 2018 MicroRNAs (miRNAs) are small, short non-coding RNAs that bind to specific messenger RNAs (mRNAs) and regulate gene expression either Query the complete- and chromosome-level NCBI Genome database ( Prokaryotes) with your own genomes to identify the most closely related complete SCA® dataShare connects the Sperm Class Analyzer CASA System with any LIS or database system: HL7, server shared database, automatic export, custom MicroRNA publishers letters full-length research review articles drug clinical trial studies and thematic issues on all aspects of microRNA research. Nov 24, 2020 “A unified and publicly available database like the RCSB PDB didn't exist during the spanish flu nor the bubonic plague … it enables scientists May 8, 2017 A specialized database for immune miRNAs is highly desirable to demonstrate the immune miRNA disease associations in the interactome. microRNA Discovery & Profiling.